DNA Repair Protein Rad51

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Repair Protein Rad51
  Conformer 1
(PDB)
1szp (A)
  Conformer 2
(PDB)
1szp (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 212 0.64   159 - 393
2 77 0.63   82 - 158

Sequence


           _________________________________________________________________________155____________________________________________ 
 1szp(A) : MVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 
         :                                                                                                                          
 1szp(D) : MVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 
           _________________________________________________________________________155____________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1szp(A) : VTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDeLSARQMHLAKFMRALQRLADQFGVAVVVT 
         :                                                                                                                          
 1szp(D) : VTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDeLSARQMHLAKFMRALQRLADQFGVAVVVT 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________                                                                  
 1szp(A) : NQVVtGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDGVGDP                                                                  
         :                                                                                                                          
 1szp(D) : NQV--gGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDGVGDP                                                                  
           _______________________________________________________                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.8
Translation
(A)
0.5
Closure
(%)
3.5
Bending Residues
( green )
  155 - 159
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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