D-Ribose-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Ribose-Binding Protein
  Conformer 1
(PDB)
1ba2 (A)
  Conformer 2
(PDB)
2dri  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 135 0.45   103 - 233   266 - 269
2 132 0.75   3 - 102   234 - 265

Sequence


           ___________________________________________________________________________________________________102__________________ 
 1ba2(A) : KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTRSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 
         :                                                                                                                          
 2dri    : KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 
           ___________________________________________________________________________________________________102__________________ 

           ______________________________________________________________________________________________________________233_______ 
 1ba2(A) : GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 
         :                                                                                                                          
 2dri    : GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 
           ______________________________________________________________________________________________________________233_______ 

           ____________________263________                                                                                          
 1ba2(A) : GAKGVETADKVLKGEKVQAKYPVDLKLVVKQ                                                                                          
         :                                                                                                                          
 2dri    : GAKGVETADKVLKGEKVQAKYPVDLKLVVKQ                                                                                          
           ____________________263________                                                                                          

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
62.9
Translation
(A)
-0.1
Closure
(%)
68.1
Bending Residues
( green )
  102 - 105
  233 - 235
  263 - 267
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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