Eiav Capsid Protein P26

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Eiav Capsid Protein P26
  Conformer 1
(PDB)
1eia  
  Conformer 2
(PDB)
2eia (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 129 0.82   19 - 147
2 71 0.45   148 - 218

Sequence


           ________________________________________________________________________________________________________________________ 
 1eia    : TPRGYTTWVNTIQTNGLLNEASQNLFGILSVDCTSEEMNAFLDVVPGQAGQKQILLDAIDKIADDWDNRHPLPNAPLVAPPQGPIPMTARFIRGLGVPRERQMEPAFDQFRQTYRQWIIE 
         :                                                                                                                          
 2eia(B) : *PRGYTTWVNTIQTNGLLNEASQNLFGILSVDCTSEEMNAFLDVVPGQAGQKQILLDAIDKIADDWDNRHPLPNAPLVAPPQGPIPMTARFIRGLGVPRERQMEPAFDQFRQTYRQWIIE 
           ________________________________________________________________________________________________________________________ 

           ________146____________________________________________________________________________                                  
 1eia    : AMSEGIKVMIGKPKAQNIRQGAKEPYPEFVDRLLSQIKSEGHPQEISKFLTDTLTIQNANEECRNAMRHLRPEDTLEEKMYACRDIG                                  
         :                                                                                                                          
 2eia(B) : AMSEGIKVMIGKPKAQNIRQGAKEPYPEFVDRLLSQIKSEGHPQEISKFLTDTLTIQNANEECRNAMRHLRPEDTLEEKMYACRD**                                  
           ________146____________________________________________________________________________                                  

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
93.7
Translation
(A)
0.2
Closure
(%)
78.4
Bending Residues
( green )
  146 - 149
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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