Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB)
1ob5 (C)
  Conformer 2
(PDB)
1exm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 254 1.35   8 - 215   221 - 228   235 - 242   246 - 248   266 - 268   275 - 286   292 - 303
2 142 1.35   216 - 220   229 - 234   243 - 245   249 - 265   269 - 274   287 - 291   304 - 403

Sequence


           ________________________________________________________________________________________________________________________ 
 1ob5(C) : ***IRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILL 
         :                                                                                                                          
 1exm(A) : GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILL 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________211_____219______228_232_______242 
 1ob5(C) : ARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 
         :                                                                                                                          
 1exm(A) : ARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 
           ______________________________________________________________________________________211_____219______228_232_______242 

           ___248______________265______274_________286__291_________303___________________________________________________________ 
 1ob5(C) : ERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMV 
         :                                                                                                                          
 1exm(A) : ERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMV 
           ___248______________265______274_________286__291_________303___________________________________________________________ 

           ___________________________________________                                                                              
 1ob5(C) : MPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                              
         :                                                                                                                          
 1exm(A) : MPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                              
           ___________________________________________                                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.1
Translation
(A)
0.6
Closure
(%)
52.1
Bending Residues
( green )
  211 - 216
  219 - 221
  228 - 229
  232 - 235
  242 - 243
  245 - 246
  248 - 249
  265 - 266
  268 - 269
  274 - 275
  286 - 287
  291 - 292
  303 - 304
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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