Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB) 		1aip (A)
  Conformer 2
(PDB) 		1tui (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 194 0.81   95 - 98   214 - 403
2 175 1.68   11 - 94   99 - 213

Sequence


           ______________________________________________________________________80________________________________________________ 
 1aip(A) : KPHVNVGTIGHVDHGKTTLTAALTYVTAAENP------------------------tAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 
         :                                                                                                                          
 1tui(B) : KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 
           ______________________________________________________________________80________________________________________________ 

           __________________________________________________________________________________213___________________________________ 
 1aip(A) : PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVK 
         :                                                                                                                          
 1tui(B) : PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVK 
           __________________________________________________________________________________213___________________________________ 

           ________________________________________________________________________________________________________________________ 
 1aip(A) : VGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNV 
         :                                                                                                                          
 1tui(B) : VGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNV 
           ________________________________________________________________________________________________________________________ 

           _____________________________________                                                                                    
 1aip(A) : TFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                                    
         :                                                                                                                          
 1tui(B) : TFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                                    
           _____________________________________                                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.3
Translation
(A) 		0.2
Closure
(%) 		66.1
Bending Residues
( green ) 		  80 - 99
  213 - 214
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download