Elongation Factor Tu, Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu, Mitochondrial
  Conformer 1
(PDB) 		1xb2 (A)
  Conformer 2
(PDB) 		1d2e (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 112 0.82   126 - 139   345 - 449
2 146 1.03   58 - 125   143 - 250
3 91 0.6   252 - 344

Sequence


           ____________________________________________________________________125___________139___________________________________ 
 1xb2(A) : *PHVNVGTIGHVDHGKTTLTAAITKILAE----------------------------hVEYSTAARHYAHTDCPGHADYVKN-iTGTAPLDGCILVVAANDGP-pQTREHLLLARQIGVE 
         :                                                                                                                          
 1d2e(C) : KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE 
           ____________________________________________________________________125___________139___________________________________ 

           _________________________________________________________________________250____________________________________________ 
 1xb2(A) : HVVVYVNKADAVQDSE-vELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLG 
         :                                                                                                                          
 1d2e(C) : HVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLG 
           _________________________________________________________________________250____________________________________________ 

           _______________________________________________344______________________________________________________________________ 
 1xb2(A) : HSKNIRTVVTGIE-fHKSLDRAEAGDNLGALVRGLKREDLRRGLV-aKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHF-pV-fSLTWD-aCRIILPPGKELA-pGEDLKLTLILRQP- 
         :                                                                                                                          
 1d2e(C) : HSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPM 
           _______________________________________________344______________________________________________________________________ 

           ______________________________________                                                                                   
 1xb2(A) : iLEKGQRFTLRDGNRTIGTGLVTDTPA-tEEDKNIKWS                                                                                   
         :                                                                                                                          
 1d2e(C) : ILEKGQRFTLRDGNRTIGTGLVTDTPAMTEEDKNIKW*                                                                                   
           ______________________________________                                                                                   

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 30.1 3.5 98.0   125 - 134   139 - 143 Bending Region Analysis
1 3 17.5 -0.3 92.6   344 - 345 Bending Region Analysis
2 3 45.9 0.7 95.3   250 - 252 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification:

No Contacts

PyMOL Script

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