Endothiapepsin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Endothiapepsin
  Conformer 1
(PDB)
1gvu (A)
  Conformer 2
(PDB)
4ape  
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 215 0.56   5 - 189   215 - 230   276 - 277   303 - 314   316 - 317
2 105 0.58   190 - 214   231 - 275   278 - 302   315 - 315   318 - 326

Sequence


           ________________________________________________________________________________________________________________________ 
 1gvu(A) : STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEV--qTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDS 
         :                                                                                                                          
 4ape    : STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDS 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________189______________________214_____________230__________ 
 1gvu(A) : TIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVS 
         :                                                                                                                          
 4ape    : TIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVS 
           _________________________________________________________________184A______________________207_____________226__________ 

           ________________________________275________________________302_________314________________                               
 1gvu(A) : GAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK                               
         :                                                                                                                          
 4ape    : GAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK                               
           ________________________________270________________________299_________311________________                               

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.8
Translation
(A)
-0.1
Closure
(%)
9.6
Bending Residues
( green )
  189 - 190
  214 - 215
  230 - 231
  275 - 280
  302 - 303
  314 - 322
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download