Exocyst Complex Component Exo70

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Exocyst Complex Component Exo70
  Conformer 1
(PDB)
2b7m (A)
  Conformer 2
(PDB)
2b1e (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 241 1.15   303 - 303   341 - 619
2 240 1.95   75 - 302   304 - 340

Sequence


           ________________________________________________________________________________________________________________________ 
 2b7m(A) : ******SVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDD-lEDIQSGQANREENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQINITKK-pFPYYEDQQLGALSWIL 
         :                                                                                                                          
 2b1e(A) : TLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQS----rEENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQINITKKMPFPYYEDQQLGALSWIL 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________302________________ 
 2b7m(A) : DYFHGNSEGSIIQDILVGERSKLILKC-aFLEPFAKEsSG-nSYTEALLGFIANEKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESINDVKKS 
         :                                                                                                                          
 2b1e(A) : DYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAkGSSGMNSYTEALLGFIANEKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVR-----fGFFSFELVESINDVKKS 
           _____________________________________________________________________________________________________302________________ 

           ___________________340__________________________________________________________________________________________________ 
 2b7m(A) : LRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDT-sRLRKFSEYKNGCLGA-dNITRENWLPSNYKEKEYTLQNEALNWEDHNVLLSCFISDCIDTL 
         :                                                                                                                          
 2b1e(A) : LRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQn----WEDHNVLLSCFISDCIDTL 
           ___________________340__________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2b7m(A) : AVNLERKAQIAL-pNQEPDVANPNSSKNKHKQRIGFFIL-nLTLVEQIVEKSELNL-lAGEGHSRLERLKKRYISY-vSDWRDLTANL---------------------------eGFED 
         :                                                                                                                          
 2b1e(A) : AVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIGFFILMNLTLVEQIVEKSELNLMLAGEGHSRLERLKKRYISYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFED 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________                                                        
 2b7m(A) : LVSKTKQYKLSDPSLKVTLKSEIISLV-p-yERFYSRYKDSFKNPRKHIKYTPDELTTVLNQLVR                                                        
         :                                                                                                                          
 2b1e(A) : LVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKNPRKHIKYTPDELTTVLNQLVR                                                        
           _________________________________________________________________                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.6
Translation
(A)
-0.4
Closure
(%)
66.7
Bending Residues
( green )
  302 - 304
  340 - 341
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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