Fab Antibody Light Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fab Antibody Light Chain
  Conformer 1
(PDB)
1cr9 (L)
  Conformer 2
(PDB)
1yed (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 96 0.54   7 - 37   48 - 106A
2 96 1.42   38 - 47   108 - 193

Sequence


           _________________________________30______________46_________________________________________________________106A________ 
 1cr9(L) : DVVMTQTPLSLSVTIGQPASISCKSSQSLLDSDGKTYLIWVFQRPGQSPKRLIFLVSKRDSGVPDRFTGSGSGTDFTLKISRVEAEDVGVYYCWQGTHFPHTVGGGTKLEIARADAAPTV 
         :                                                                                                                          
 1yed(A) : DIVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLESGVPDRFTGSGSGTDFTLKISRVEAADLGVYYCVQGTHFPYTFGGGTKLEILRADAAPTV 
           _________________________________30______________46__________________________________________________________107________ 

           ___________________________________________________________________________________________________                      
 1cr9(L) : SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC                      
         :                                                                                                                          
 1yed(A) : SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC                      
           ___________________________________________________________________________________________________                      

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.1
Translation
(A)
0.8
Closure
(%)
38.7
Bending Residues
( green )
  30 - 38
  46 - 48
  106A - 108
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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