Fab 2G12, Light Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fab 2G12, Light Chain
  Conformer 1
(PDB)
1op5 (K)
  Conformer 2
(PDB)
1op3 (K)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 127 0.69   4 - 113   138 - 140   162 - 173   200 - 201
2 79 0.75   114 - 137   141 - 161   174 - 199   202 - 209

Sequence


           _____________________________________________________________________________________________________________113________ 
 1op5(K) : VVMTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQHYAGYSATFGQGTRVEIKRTVAAPSVFIFPPS 
         :                                                                                                                          
 1op3(K) : VVMTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQHYAGYSATFGQGTRVEIKRTVAAPSVFIFPPS 
           _____________________________________________________________________________________________________________113________ 

           _____________137_____________________161_________173_______________________199______________                             
 1op5(K) : DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE                             
         :                                                                                                                          
 1op3(K) : DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG*                             
           _____________137_____________________161_________173_______________________199______________                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.9
Translation
(A)
0.1
Closure
(%)
88.1
Bending Residues
( green )
  113 - 114
  137 - 138
  140 - 141
  161 - 162
  173 - 174
  199 - 202
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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