Farnesyl Diphosphate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Farnesyl Diphosphate Synthase
  Conformer 1
(PDB) 		2f7m (F)
  Conformer 2
(PDB) 		2f94 (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 47 0.44   172 - 173   189 - 197   199 - 199   222 - 224   228 - 239   328 - 347
2 201 0.56   12 - 171   174 - 188   198 - 198   200 - 221   225 - 227
3 88 0.42   240 - 327

Sequence


           ________________________________________________________________________________________________________________________ 
 2f7m(F) : *VYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLD 
         :                                                                                                                          
 2f94(F) : DVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLD 
           ________________________________________________________________________________________________________________________ 

           _________________________________________171______________188______197_____________________221___227_________239________ 
 2f7m(F) : AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLD 
         :                                                                                                                          
 2f94(F) : AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLD 
           _________________________________________171______________188______197_____________________221___227_________239________ 

           _____________________________________________________________________________327______________________                   
 2f7m(F) : LFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIY                   
         :                                                                                                                          
 2f94(F) : LFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIY                   
           _____________________________________________________________________________327______________________                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.5
Translation
(A) 		0.1
Closure
(%) 		98.4
Bending Residues
( green ) 		  171 - 174
  188 - 189
  197 - 200
  221 - 222
  224 - 225
  227 - 228
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		9.1
Translation
(A) 		0.1
Closure
(%) 		13.0
Bending Residues
( green ) 		  239 - 240
  327 - 328
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download