F1 Capsule Antigen

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name F1 Capsule Antigen
  Conformer 1
(PDB)
1p5v (B)
  Conformer 2
(PDB)
1p5u (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 70 0.82   30 - 40   59 - 87   101 - 106   123 - 146
2 55 0.75   18 - 29   41 - 58   88 - 100   111 - 122

Sequence


           ______________29_______38__________________58___________________________87__________100___106_____________122___________ 
 1p5v(B) : VEPARITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKL 
         :                                                                                                                          
 1p5u(C) : **PARITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGEN----dVVLATGSQDFFVRSIGSKGGKL 
           ______________29_______38__________________58___________________________87__________100___106_____________122___________ 

           ________________                                                                                                         
 1p5v(B) : AAGKYTDAVTVTVSNQ                                                                                                         
         :                                                                                                                          
 1p5u(C) : AAGKYTDAVTVTVSNQ                                                                                                         
           ________________                                                                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.2
Translation
(A)
-0.5
Closure
(%)
54.6
Bending Residues
( green )
  29 - 30
  38 - 41
  58 - 59
  87 - 88
  100 - 101
  106 - 111
  122 - 123
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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