Fimbrin-Like Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fimbrin-Like Protein
  Conformer 1
(PDB)
1pxy (B)
  Conformer 2
(PDB)
1pxy (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 343 1.04   126 - 240   389 - 621
2 118 1.38   241 - 388

Sequence


           __________________________________________________________________________________________________________________239___ 
 1pxy(B) : QSEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLA 
         :                                                                                                                          
 1pxy(A) : *SEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLA 
           __________________________________________________________________________________________________________________239___ 

           ________________________________________________________________________________________________________________________ 
 1pxy(B) : DLNLKKTPQLVEdVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAERMNCKRYLTAEEIVEGSSTLNLAFVAQIFH 
         :                                                                                                                          
 1pxy(A) : DLNLKK-----------lRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAERMNCKRYLTAEEIVEGSSTLNLAFVAQIFH 
           ________________________________________________________________________________________________________________________ 

           371_____________________________________________________________________________________________________________________ 
 1pxy(B) : ERNGLNdVETCRDERCYRLWINSLGIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQL 
         :                                                                                                                          
 1pxy(A) : ERNGLNdVETCRDERCYRLWINSLGIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQL 
           371_____________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________________________    
 1pxy(B) : LKSLgKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQR    
         :                                                                                                                          
 1pxy(A) : LKSLRSeMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQR    
           _____________________________________________________________________________________________________________________    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
47.3
Translation
(A)
-2.8
Closure
(%)
39.5
Bending Residues
( green )
  239 - 241
  371 - 390
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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