5'-Fluoro-5'-Deoxyadenosine Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 5'-Fluoro-5'-Deoxyadenosine Synthase
  Conformer 1
(PDB)
2c4u (E)
  Conformer 2
(PDB)
2cbx (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 211 0.46   11 - 94   101 - 189   208 - 215   250 - 264   275 - 289
2 74 0.88   95 - 100   190 - 207   216 - 249   265 - 274   290 - 295

Sequence


           _____________________________________________________________________________________94___100___________________________ 
 2c4u(E) : RPIIAFMSDLGTTDDSVAQCKGLMYSICPDVTVVDVCHSMTPWDVEEGARYIVDLPRFFPEGTVFATTTYPATGTTTRSVAVRIKQAAKGGARGQWAGSGAGFERAEGSYIYIAPNNGLL 
         :                                                                                                                          
 2cbx(B) : RPIIAFMSDLGTTDDSVAQCKGLMYSICPDVTVVDVCHSMTPWDVEEGARYIVDLPRFFPEGTVFATTTYPATGTTTRSVAVRIKQAAKGGARGQWAGSGAGFERAEGSYIYIAPNNGLL 
           _____________________________________________________________________________________94___100___________________________ 

           ___________________________________________________________189_______________207_____215______________________________24 
 2c4u(E) : TTVLEEHGYLEAYEVTSPKVIPEQPEPTFYSREMVAIPSAHLAAGFPLSEVGRPLEDHEIVRFNRPAVEQDGEALVGVVSAIDHPFGNVWTNIHRTDLEKAGIGYGARLRLTLDGVLPFE 
         :                                                                                                                          
 2cbx(B) : TTVLEEHGYLEAYEVTSPKVIPEQPEPTFYSREMVAIPSAHLAAGFPLSEVGRPLEDHEIVRFNRPAVEQDGEALVGVVSAIDHPFGNVWTNIHRTDLEKAGIGYGARLRLTLDGVLPFE 
           ___________________________________________________________189_______________207_____215______________________________24 

           8_____________264_______274_____282________________                                                                      
 2c4u(E) : APLTPTFADAGEIGNIAIYLNSRGYLSIARNAASLAYPYHLKEGMSARVEA                                                                      
         :                                                                                                                          
 2cbx(B) : APLTPTFADAGEIGNIAIYLNSRGYLSIARNAASLAYPYHLKEGMSARVEA                                                                      
           8_____________264_______274_____282________________                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.5
Translation
(A)
0.1
Closure
(%)
56.8
Bending Residues
( green )
  94 - 95
  100 - 102
  189 - 190
  207 - 208
  215 - 216
  248 - 251
  264 - 265
  274 - 276
  282 - 290
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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