Gamma-Glutamyltranspeptidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gamma-Glutamyltranspeptidase
  Conformer 1
(PDB)
2dg5 (B)
  Conformer 2
(PDB)
2e0x (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 110 0.38   466 - 578
2 55 0.43   393 - 458

Sequence


           ________________________________________________________________458_____________________________________________________ 
 2dg5(B) : TTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQdDFSAKPGVPNVYGLVGGDANAVGPNKRPLSSsPTIVVKDGKTWLVTGSPGGSRIITTVLQvVNSIDYGLNVAEATNAPR 
         :                                                                                                                          
 2e0x(D) : TTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQdDFSAKP----------gDANAVGPNKRPLSSsPTIVVKDGKTWLVTGSPGGSRIITTVLQvVNSIDYGLNVAEATNAPR 
           ________________________________________________________________458_____________________________________________________ 

           _________________________________________________________________                                                        
 2dg5(B) : FHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAgSTQSIvGPDGELYGASDPRSVDDLTAGY                                                        
         :                                                                                                                          
 2e0x(D) : FHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAgSTQSIvGPDGELYGASDPRSVDDLTAGY                                                        
           _________________________________________________________________                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.6
Translation
(A)
0.0
Closure
(%)
70.7
Bending Residues
( green )
  458 - 466
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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