Gamma-Delta Resolvase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gamma-Delta Resolvase
  Conformer 1
(PDB) 		1gdt (B)
  Conformer 2
(PDB) 		1zr4 (E)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 25 0.55   104 - 128
2 91 2.09   6 - 96
3 50 0.94   129 - 178

Sequence


           ______________________________________________________________________________________________96________________________ 
 1gdt(B) : MRLFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQ 
         :                                                                                                                          
 1zr4(E) : MALFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKVKEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDSYIGKMVVTILSAVAQAERQ 
           ______________________________________________________________________________________________96________________________ 

           _____128_______________________________________________________                                                          
 1gdt(B) : RILERTNEGRQEAMAKGVVFGRKRKIDRDAVLNMWQQGLGASHISKTMNIARSTVYKVINESN                                                          
         :                                                                                                                          
 1zr4(E) : RILQRTNEGRQEAMAKGVVFGRKRKIDRDAVLNMWQQGLGASHISKTMNIARSTVYKVINESN                                                          
           _____128_______________________________________________________                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		42.4
Translation
(A) 		-4.4
Closure
(%) 		63.6
Bending Residues
( green ) 		  96 - 106
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		43.5
Translation
(A) 		0.0
Closure
(%) 		23.3
Bending Residues
( green ) 		  128 - 132
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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