Gelation Factor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gelation Factor
  Conformer 1
(PDB)
1qfh (B)
  Conformer 2
(PDB)
1wlh (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 110 0.41   648 - 757
2 98 0.87   758 - 855

Sequence


           ________________________________________________________________________________________________________________________ 
 1qfh(B) : **********************************************************************************************KPAPSAEHSYAEGEGLVKVFDNAPAE 
         :                                                                                                                          
 1wlh(B) : ADPEKSYAEGPGLDGGECFQPSKFKIHAVDPDGVdGGDGFVVTIEGPAPVDPVMVDNGDGTYDVEFEPKEAGDYVINLTLDGDNVNGFPKTVTVKPAPSAEHSYAEGEGLVKVFDNAPAE 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________753______________________________________ 
 1qfh(B) : FTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVKTYGGDKFEVSITGPAE 
         :                                                                                                                          
 1wlh(B) : FTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVKTYGGDKFEVSITGPAE 
           _______________________________________________________________________________753______________________________________ 

           __________________________________________________________________                                                       
 1qfh(B) : EITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIEGSPFKQVLGNPGKKNPEVKSFTTTRTAN                                                       
         :                                                                                                                          
 1wlh(B) : EITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIEGSPFKQVLGNPGKKNPEVKSFTTTRTAN                                                       
           __________________________________________________________________                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.1
Translation
(A)
-0.3
Closure
(%)
40.6
Bending Residues
( green )
  753 - 761
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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