Gene V Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gene V Protein
  Conformer 1
(PDB)
1vqj  
  Conformer 2
(PDB)
1yha (B)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 41 1.14   33 - 54   62 - 80
2 33 0.89   7 - 32   55 - 61

Sequence


           ______________________________32____________________54____60___________________________                                  
 1vqj    : MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYIDLGNEYPVLVKITLDEGQPAYAPGLYTVHLSSFKVGQFGSLMIDRLRLVPA*                                  
         :                                                                                                                          
 1yha(B) : MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYVDLGNEHPVLVKITLDEGQPAYAPGLYTVHLSSFKVGQFGSLMIDRLRLVPAK                                  
           ______________________________32____________________54____60___________________________                                  

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.6
Translation
(A)
0.5
Closure
(%)
26.3
Bending Residues
( green )
  32 - 33
  54 - 55
  60 - 62
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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