Glcnac-Alpha-1,4-Gal-Releasing Endo-Beta- Galactosidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glcnac-Alpha-1,4-Gal-Releasing Endo-Beta- Galactosidase
  Conformer 1
(PDB)
1ups (A)
  Conformer 2
(PDB)
1ups (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 263 0.27   21 - 283
2 130 0.7   284 - 418

Sequence


           ________________________________________________________________________________________________________________________ 
 1ups(A) : AKDFPANPIEKAGYKLDFSDEFNGPTLDREKWTDYYLPHWCKDPESAKANYRFENGSLVEYITEDQKPWCPEHDGTVRSSAIMSFDKSWIHNFSGTTDNHERNEWRGYTTKYGYFEIRAK 
         :                                                                                                                          
 1ups(B) : **DFPANPIEKAGYKLDFSDEFNGPTLDREKWTDYYLPHWCKDPESAKANYRFENGSLVEYITEDQKPWCPEHDGTVRSSAIMSFDKSWIHNFSGTTDNHERNEWRGYTTKYGYFEIRAK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ups(A) : LSNTGGGGHQAWWMVGMQDDTNDWFNSKQTGEIDILETFFSKKDTWRIAAYGWNDPNFQTSWTISEDKVPSGDPTSEYHIYAMEWTPTALKFYYDNELFKVIYGSPDYEMGTILNIYTDA 
         :                                                                                                                          
 1ups(B) : LSNTGGGGHQAWWMVGMQDDTNDWFNSKQTGEIDILETFFSKKDTWRIAAYGWNDPNFQTSWTISEDKVPSGDPTSEYHIYAMEWTPTALKFYYDNELFKVIYGSPDYEMGTILNIYTDA 
           ________________________________________________________________________________________________________________________ 

           ______________________281_______________________________________________________________________________________________ 
 1ups(A) : GSGAHNDVWPKEWAIDYMRVWKPVDGYKESlNNYLIRNRQTGKFLYIEENNDKVSYGDITLKNEKNAKWSKEYRDGYTLLKNNETGEYLNIENQTGYIEHGKVPKTWWSAQWSEVPVDGY 
         :                                                                                                                          
 1ups(B) : GSGAHNDVWPKEWAIDYMRVWKPVDGYK---nNYLIRNRQTGKFLYIEENNDKVSYGDITLKNEKNAKWSKEYRDGYTLLKNNETGEYLNIENQTGYIEHGKVPKTWWSAQWSEVPVDGY 
           ______________________281_______________________________________________________________________________________________ 

           __________________________________________                                                                               
 1ups(A) : TRFVNRWKPNMSIHTESYEGVLQYGNVPNTYWTSQWQLIPVE                                                                               
         :                                                                                                                          
 1ups(B) : TRFVNRWKPNMSIHTESYEGVLQYGNVPNTYWTSQWQLIPVE                                                                               
           __________________________________________                                                                               

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.4
Translation
(A)
4.5
Closure
(%)
79.3
Bending Residues
( green )
  281 - 291
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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