Glcnac1p Uridyltransferase Isoform 1: Agx1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glcnac1p Uridyltransferase Isoform 1: Agx1
  Conformer 1
(PDB)
1jv1 (A)
  Conformer 2
(PDB)
1jvd (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 418 1.07   42 - 206   208 - 208   217 - 357   369 - 499
2 58 0.58   4 - 41   207 - 207   209 - 216   358 - 368

Sequence


           ______________________________________40________________________________________________________________________________ 
 1jv1(A) : MNINDLKLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGF------rMEPVPREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMY 
         :                                                                                                                          
 1jvd(B) : *NINDLKLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQnVDARMEPVPREVLGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTR---aYPKGMY 
           ______________________________________40________________________________________________________________________________ 

           ______________________________________________________________________________206_______216_____________________________ 
 1jv1(A) : DVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIW 
         :                                                                                                                          
 1jvd(B) : DVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIW 
           ______________________________________________________________________________206_______216_____________________________ 

           _____________________________________________________________________________________________________________357________ 
 1jv1(A) : SIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQG 
         :                                                                                                                          
 1jvd(B) : SIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQG 
           _____________________________________________________________________________________________________________357________ 

           368_____________________________________________________________________________________________________________________ 
 1jv1(A) : QLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHCWVLNAGGHFIDENGSRLPAIPRLKDANDVPIQCEISPLISYAGEGLESYVADKE 
         :                                                                                                                          
 1jvd(B) : QLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHCWVLNAGGHFIDENGSRLPAIPR------vPIQCEISPLISYAGEGLESYVADKE 
           368_____________________________________________________________________________________________________________________ 

           ________________                                                                                                         
 1jv1(A) : FHAPLIIDENGVHELV                                                                                                         
         :                                                                                                                          
 1jvd(B) : FHAPLIIDENGVHELV                                                                                                         
           ________________                                                                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.1
Translation
(A)
0.9
Closure
(%)
96.6
Bending Residues
( green )
  40 - 42
  206 - 209
  216 - 217
  357 - 359
  368 - 369
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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