Glucodextranase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucodextranase
  Conformer 1
(PDB)
1ulv (A)
  Conformer 2
(PDB)
1ug9 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 947 0.52   4 - 18   21 - 306   315 - 514   516 - 554   559 - 566   593 - 615   618 - 627   653 - 1018
2 68 0.72   19 - 20   307 - 314   515 - 515   555 - 558   567 - 592   616 - 617   628 - 652

Sequence


           ___________14___________________________________________________________________________________________________________ 
 1ulv(A) : TAEPPGSPGAAATWTKGDKEGVGTSLNPASKVWYTLTEGTMSEVYYPHADTPNTRELQFAVSDGTSAQRESEQTTRTVELADPKALSYRQTTTDNAGRWRLTKTYVTDPRRSTVMLGVTF 
         :                                                                                                                          
 1ug9(A) : TAEPPGSPGAAATWTKGDKEGVGTSLNPASKVWYTLTEGTMSEVYYPHADTPNTRELQFAVSDGTSAQRESEQTTRTVELADPKALSYRQTTTDNAGRWRLTKTYVTDPRRSTVMLGVTF 
           ___________14___________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ulv(A) : EVLDGGDYQLFVLSDPSLAGTSGGDTGSVTDGALLASDLADAATPVATALVSSVGFGAVANGYVGTSDGWTDLAADGRLDNASATAGPGNISQTGQIPLAAGGKTEFSLALGFGADTAEA 
         :                                                                                                                          
 1ug9(A) : EVLDGGDYQLFVLSDPSLAGTSGGDTGSVTDGALLASDLADAATPVATALVSSVGFGAVANGYVGTSDGWTDLAADGRLDNASATAGPGNISQTGQIPLAAGGKTEFSLALGFGADTAEA 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________306_____314_______________________________________________ 
 1ulv(A) : LATAKASLGTGYKKVSKSYTGEWKKYLNSLDAPATSLTGALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGDEEAAARGVEWLFTYQ 
         :                                                                                                                          
 1ug9(A) : LATAKASLGTGYKKVSKSYTGEWKKYLNSLDAPATSLTGALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGDEEAAARGVEWLFTYQ 
           ______________________________________________________________306_____314_______________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ulv(A) : QQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRTDAGFYRNELKPAADYLVAAGPKTPQERWEETGGYSTSTLASQIAALAAAADIAGKNGDAGSAAVYRATADEWQRSTEKWM 
         :                                                                                                                          
 1ug9(A) : QQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRTDAGFYRNELKPAADYLVAAGPKTPQERWEETGGYSTSTLASQIAALAAAADIAGKNGDAGSAAVYRATADEWQRSTEKWM 
           ________________________________________________________________________________________________________________________ 

           ____________________________512_______________________________________554_558_____566_______________________592_________ 
 1ulv(A) : FTTNGPVGDGKYYLRISATGNPNDGATRDWGNGAGVHPENAVLDGGFLEFVRLGVKAPADPYVADSLAETDASISQETPGGRMWHRYTYDGYGEKADGSPWDGTGIGRLWPLLSGERGEY 
         :                                                                                                                          
 1ug9(A) : FTTNGPVGDGKYYLRISATGNPNDGATRDWGNGAGVHPENAVLDGGFLEFVRLGVKAPADPYVADSLAETDASISQETPGGRMWHRYTYDGYGEKADGSPWDGTGIGRLWPLLSGERGEY 
           ____________________________512_______________________________________554_558_____566_______________________592_________ 

           ___________615_________627______________644_____________________________________________________________________________ 
 1ulv(A) : ALANGQDALPYLETMHSAANAGYMIPEQVWDRDEPTSYGHELGRSTGSASPLSWAMAQYVRLAAGVKAGAPVETPQNVAARYAAGTPLSSPELSVTAPEALSTADSATAVVRGTTNAAKV 
         :                                                                                                                          
 1ug9(A) : ALANGQDALPYLETMHSAANAGYMIPEQVWDRDEPTSYGHELGRSTGSASPLSWAMAQYVRLAAGVKAGAPVETPQNVAARYAAGTPLSSPELSVTAPEALSTADSATAVVRGTTNAAKV 
           ___________615_________627______________644_____________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ulv(A) : YVSVNGTATEAPVTDGTFSLDVALTGAKNKVTVAAVAADGGTAVEDRTVLYYGSRIGALSDPAGDDNGPGTYRYPTNSAYVPGAFDLTGVDVYDAGDDYAFVATIAGEVTNPWGGQAISH 
         :                                                                                                                          
 1ug9(A) : YVSVNGTATEAPVTDGTFSLDVALTGAKNKVTVAAVAADGGTAVEDRTVLYYGSRIGALSDPAGDDNGPGTYRYPTNSAYVPGAFDLTGVDVYDAGDDYAFVATIAGEVTNPWGGQAISH 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ulv(A) : QRVNIYLGKGEGGATPGLPGTNINLEHAWDSVIVTDGRFDGAGVYAPDGTRTSAVSLLAVPEARQIVTRVPKAALGGLDPATARMSVAMFGNAESGEGIGNVRPVYDGAYWEAGDPAWIK 
         :                                                                                                                          
 1ug9(A) : QRVNIYLGKGEGGATPGLPGTNINLEHAWDSVIVTDGRFDGAGVYAPDGTRTSAVSLLAVPEARQIVTRVPKAALGGLDPATARMSVAMFGNAESGEGIGNVRPVYDGAYWEAGDPAWIK 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________                                                              
 1ulv(A) : EWRFGGGAGVFDGTIPSRDTDTDDPNALDVLVGEGQTQAAVLDWRAGSPVVVPMLGLQP                                                              
         :                                                                                                                          
 1ug9(A) : EWRFGGGAGVFDGTIPSRDTDTDDPNALDVLVGEGQTQAAVLDWRAGSPVVVPMLGLQP                                                              
           ___________________________________________________________                                                              

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.9
Translation
(A)
0.1
Closure
(%)
99.9
Bending Residues
( green )
  14 - 21
  306 - 307
  314 - 315
  512 - 516
  554 - 555
  558 - 559
  566 - 567
  592 - 593
  615 - 618
  627 - 628
  644 - 653
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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