Glucose-Resistance Amylase Regulator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucose-Resistance Amylase Regulator
  Conformer 1
(PDB)
2jcg (A)
  Conformer 2
(PDB)
1zvv (G)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 128 0.81   61 - 158   293 - 322
2 42 1.1   5 - 49
3 142 0.72   159 - 292   323 - 330

Sequence


           _____________________________________________47_________________________________________________________________________ 
 2jcg(A) : **VTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAV--------tTTVGVIIPDISNIFYAeLARGIEDIASMYKYNIILSNSDQNQDKQLHLLNNMLGKQVDGI 
         :                                                                                                                          
 1zvv(G) : MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIE---yRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIASMYKYNIILSNSDQNQDKQLHLLNNMLGKQVDGI 
           _____________________________________________47_________________________________________________________________________ 

           ___________________________________158__________________________________________________________________________________ 
 2jcg(A) : IFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKP 
         :                                                                                                                          
 1zvv(G) : IFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKP 
           ___________________________________158__________________________________________________________________________________ 

           _______________________________________________290_____________________________322__________                             
 2jcg(A) : TAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVELPHRIEFRQSTK                             
         :                                                                                                                          
 1zvv(G) : TAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSIVELPHRIEFRQSTK                             
           _______________________________________________290_____________________________322__________                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
148.0
Translation
(A)
-3.4
Closure
(%)
100.0
Bending Residues
( green )
  47 - 62
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
21.5
Translation
(A)
-0.9
Closure
(%)
16.1
Bending Residues
( green )
  158 - 159
  290 - 293
  322 - 324
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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