Glucose 6-Phosphate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucose 6-Phosphate Dehydrogenase
  Conformer 1
(PDB)
1dpg (B)
  Conformer 2
(PDB)
2dpg  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 309 0.66   148 - 166   176 - 407   426 - 483
2 172 0.51   3 - 147   167 - 175   408 - 425

Sequence


           ________________________________________________________________________________________________________________________ 
 1dpg(B) : VSEIKTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDCIKDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAP 
         :                                                                                                                          
 2dpg    : VSEIKTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAP 
           ________________________________________________________________________________________________________________________ 

           _______________________146_______________164________175_________________________________________________________________ 
 1dpg(B) : RFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNH 
         :                                                                                                                          
 2dpg    : RFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNN 
           _______________________146_______________164________175_________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1dpg(B) : TMQIVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFNFGS 
         :                                                                                                                          
 2dpg    : TMQIVGWLAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFNFGS 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________407_______________425_______________________________________________________ 
 1dpg(B) : EQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYERMIHDTMNGDGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKSGSMGPEASDKLLAANGDA 
         :                                                                                                                          
 2dpg    : EQEAQEAVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYERMIHDTMNGDGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKSGSMGPEASDKLLAANGDA 
           ____________________________________________407_______________425_______________________________________________________ 

           _____                                                                                                                    
 1dpg(B) : WVFKG                                                                                                                    
         :                                                                                                                          
 2dpg    : WVFKG                                                                                                                    
           _____                                                                                                                    

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.4
Translation
(A)
0.5
Closure
(%)
90.6
Bending Residues
( green )
  146 - 158
  164 - 173
  175 - 176
  407 - 408
  425 - 426
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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