Glycine Cleavage System Transcriptional Repressor, Putative

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycine Cleavage System Transcriptional Repressor, Putative
  Conformer 1
(PDB) 		1u8s (B)
  Conformer 2
(PDB) 		1u8s (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 85 0.4   5 - 89
2 79 0.56   90 - 176

Sequence


           ____________________________________________________________________________________87__________________________________ 
 1u8s(B) : SLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGM 
         :                                                                                                                          
 1u8s(A) : SLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGM 
           ____________________________________________________________________________________87__________________________________ 

           ____________________________________________________                                                                     
 1u8s(B) : ASLSAQTISKnQFHIAISARVDSGCNLMQLQEEFDALCTALDVQGSLNFIKN                                                                     
         :                                                                                                                          
 1u8s(A) : ASLSAQTIS-nQFHIAISARVDSGCNLMQLQEEFDALCTALDVQGSLNFIKN                                                                     
           ____________________________________________________                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.5
Translation
(A) 		0.3
Closure
(%) 		44.0
Bending Residues
( green ) 		  87 - 90
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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