Glycogen Phosphorylase, Muscle Form

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycogen Phosphorylase, Muscle Form
  Conformer 1
(PDB)
1z8d (A)
  Conformer 2
(PDB)
1pyg (B)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 447 1.04   26 - 165   186 - 489   650 - 656   698 - 698   811 - 831
2 329 0.7   166 - 182   490 - 649   657 - 697   699 - 810

Sequence


           ________________________________________________________________________________________________________________________ 
 1z8d(A) : RPLSDQEKRKQIvRGvENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEI 
         :                                                                                                                          
 1pyg(B) : **************GVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEI 
           ________________________________________________________________________________________________________________________ 

           ____________________________________164______________181________________________________________________________________ 
 1z8d(A) : EEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKISGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGHVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWS 
         :                                                                                                                          
 1pyg(B) : EEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWS 
           ____________________________________164______________181________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1z8d(A) : AKAPgYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRILVDLERMDWDKAWDVTVRTCAYTN 
         :                                                                                                                          
 1pyg(B) : AKAP---qAVLDRNLAENIS------------kELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTN 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________________489_______ 
 1z8d(A) : HTVLPEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCN 
         :                                                                                                                          
 1pyg(B) : HTVLPEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCN 
           ______________________________________________________________________________________________________________489_______ 

           ________________________________________________________________________________________________________________________ 
 1z8d(A) : PGLAEVIAERIGEDFISDLDQLRKLLSFVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDIQVKRIHEYKRQLLNCLHVITLYNRIKREPNKFFVPRTVMIGGKAAPGYHMA 
         :                                                                                                                          
 1pyg(B) : PGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMA 
           ________________________________________________________________________________________________________________________ 

           ______________________________649__654_______________________________________696________________________________________ 
 1z8d(A) : KMIIRLVTAIGDVVNHDPAVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNM-fMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDKLDQRGYNAQEYYDRIP 
         :                                                                                                                          
 1pyg(B) : KMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIP 
           ______________________________649__654_______________________________________696________________________________________ 

           _______________________________________________________________________810__________________________                     
 1z8d(A) : ELRQVIEQLSSGFFSPKQPDLFKDIVNMLMHHDRFKVFADYEDYIKCQEKVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPA                     
         :                                                                                                                          
 1pyg(B) : ELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPA                     
           _______________________________________________________________________810__________________________                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.4
Translation
(A)
-0.3
Closure
(%)
79.2
Bending Residues
( green )
  164 - 175
  181 - 186
  489 - 490
  649 - 650
  654 - 657
  696 - 700
  810 - 811
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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