Glycosyltransferase Gtfa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycosyltransferase Gtfa
  Conformer 1
(PDB)
1pn3 (A)
  Conformer 2
(PDB)
1pnv (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 217 0.62   3 - 183   185 - 202   372 - 389
2 163 1.5   184 - 184   203 - 371

Sequence


           ________________________________________________________________________________________________________________________ 
 1pn3(A) : MRVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEKLGIPYR 
         :                                                                                                                          
 1pnv(B) : MRVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEKLGIPYR 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________183________________202______________________________________ 
 1pn3(A) : YTVLSPDHLPSEQSQAERDMYNQGADRLFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDERPLSAELEAFLAAGSTPVYVGFGSSSRPATADAA 
         :                                                                                                                          
 1pnv(B) : YTVLSPDHLPSEQSQAERDMYNQGADRLFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDERPLSAELEAFLAAGSTPVYVGFGSSSRPATADAA 
           ____________________________________________________________183________________202______________________________________ 

           ________________________________________________________________________________________________________________________ 
 1pn3(A) : KMAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVNLQELFGRVAAAIHHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVDGPVPTIDSLSAALDTALAPEI 
         :                                                                                                                          
 1pnv(B) : KMAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVNLQELFGRVAAAIHHDSAGTTLLAMRAGIPQIVVRRV-------aYHADRVAELGVGVAVDGPVPTIDSLSAALDTALAPEI 
           ________________________________________________________________________________________________________________________ 

           ________371____________________                                                                                          
 1pn3(A) : RARATTVADTIRADGTTVAAQLLFDAVSLEK                                                                                          
         :                                                                                                                          
 1pnv(B) : RARATTVADTIRADGTTVAAQLLFDAVSLEK                                                                                          
           ________371____________________                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.6
Translation
(A)
-0.5
Closure
(%)
98.2
Bending Residues
( green )
  183 - 185
  202 - 203
  371 - 374
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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