H-2 Class I Histocompatibility Antigen, K-B Alpha Chain Precursor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name H-2 Class I Histocompatibility Antigen, K-B Alpha Chain Precursor
  Conformer 1
(PDB)
1nam (H)
  Conformer 2
(PDB)
1s7t (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 168 0.58   3 - 50   57 - 176
2 103 1.57   51 - 56   177 - 273

Sequence


           ________________________________________________50____56________________________________________________________________ 
 1nam(H) : GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 
         :                                                                                                                          
 1s7t(D) : GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 
           ________________________________________________50____56________________________________________________________________ 

           _____________________________________________________176________________________________________________________________ 
 1nam(H) : CDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGT 
         :                                                                                                                          
 1s7t(D) : CDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGT 
           _____________________________________________________176________________________________________________________________ 

           ____________________________________                                                                                     
 1nam(H) : FQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRWE*                                                                                     
         :                                                                                                                          
 1s7t(D) : FQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRWEP                                                                                     
           ____________________________________                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.1
Translation
(A)
2.4
Closure
(%)
77.5
Bending Residues
( green )
  50 - 51
  56 - 57
  176 - 181
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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