H-2 Class I Histocompatibility Antigen D-B Alpha Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name H-2 Class I Histocompatibility Antigen D-B Alpha Chain
  Conformer 1
(PDB)
2cii (A)
  Conformer 2
(PDB)
1s7w (J)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 208 1.23   3 - 182   205 - 205   210 - 212   225 - 243   263 - 267
2 58 0.87   183 - 204   206 - 209   213 - 219   244 - 262   268 - 273

Sequence


           ________________________________________________________________________________________________________________________ 
 2cii(A) : GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEG 
         :                                                                                                                          
 1s7w(J) : GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________179______________________204__209_______219_____________________ 
 2cii(A) : RDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWALNGEELTQDMELVETRPAGDGT 
         :                                                                                                                          
 1s7w(J) : RDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT 
           ________________________________________________________179______________________204__209_______219_____________________ 

           243________________262__267_________                                                                                     
 2cii(A) : FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWE*                                                                                     
         :                                                                                                                          
 1s7w(J) : FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEP                                                                                     
           243________________262__267_________                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.5
Translation
(A)
-1.1
Closure
(%)
48.4
Bending Residues
( green )
  179 - 183
  204 - 206
  209 - 210
  212 - 213
  219 - 225
  243 - 244
  262 - 263
  267 - 268
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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