H-2 Class I Histocompatibility Antigen D-B Alpha Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name H-2 Class I Histocompatibility Antigen D-B Alpha Chain
  Conformer 1
(PDB)
2cii (A)
  Conformer 2
(PDB)
1s7v (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 178 0.66   3 - 180
2 93 0.78   181 - 273

Sequence


           ________________________________________________________________________________________________________________________ 
 2cii(A) : GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEG 
         :                                                                                                                          
 1s7v(A) : GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEG 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________180____________________________________________________________ 
 2cii(A) : RDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWALNGEELTQDMELVETRPAGDGT 
         :                                                                                                                          
 1s7v(A) : RDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT 
           _________________________________________________________180____________________________________________________________ 

           ____________________________________                                                                                     
 2cii(A) : FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWE*                                                                                     
         :                                                                                                                          
 1s7v(A) : FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEP                                                                                     
           ____________________________________                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.8
Translation
(A)
0.8
Closure
(%)
62.1
Bending Residues
( green )
  180 - 181
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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