33H1 Fab Light Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 33H1 Fab Light Chain
  Conformer 1
(PDB)
1ors (A)
  Conformer 2
(PDB)
1fig (L)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 107 1.31   106 - 212
2 103 1.35   3 - 105

Sequence


           _______________________________________________________________________________________________________105______________ 
 1ors(A) : QIVLTQSPAIMSASLGDRVTMTCTASSSVSSSYLHWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAATYYCHQFH-RSLTFGSGTKLEIKRADAAPTVSIFP 
         :                                                                                                                          
 1fig(L) : ENVLTQSPAIMSASPGEKVTMACRASSSVSSTYLHWYQQKSGASPKLLIYSTSNLASGVPARFSGSGSGTSYSLTISSVEAEDAATYYCQQYSGYPLTFGAGTKLELKRADAAPTVSIFP 
           _______________________________________________________________________________________________________105______________ 

           _______________________________________________________________________________________________                          
 1ors(A) : PSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC                          
         :                                                                                                                          
 1fig(L) : PSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC                          
           _______________________________________________________________________________________________                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
37.0
Translation
(A)
-0.1
Closure
(%)
98.5
Bending Residues
( green )
  105 - 106
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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