Holliday Junction Atp-Dependent DNA Helicase Ruva

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Holliday Junction Atp-Dependent DNA Helicase Ruva
  Conformer 1
(PDB)
2h5x (C)
  Conformer 2
(PDB)
2h5x (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 124 0.31   3 - 126
2 45 0.75   148 - 192

Sequence


           ________________________________________________________________________________________________________________________ 
 2h5x(C) : MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 
         :                                                                                                                          
 2h5x(A) : MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 
           ________________________________________________________________________________________________________________________ 

           ___126_________________________________________________________                                                          
 2h5x(C) : ERMVLELRDKVGVaVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK*                                                          
         :                                                                                                                          
 2h5x(A) : ERMVLELRDKVGVaVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGKA                                                          
           ___126_________________________________________________________                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.0
Translation
(A)
0.5
Closure
(%)
95.7
Bending Residues
( green )
  126 - 148
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download