Homoserine Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Homoserine Dehydrogenase
  Conformer 1
(PDB)
1ebu (A)
  Conformer 2
(PDB)
1ebf (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 247 0.77   4 - 172   218 - 244   288 - 301   321 - 357
2 107 0.97   173 - 217   245 - 287   302 - 320

Sequence


           ________________________________________________________________________________________________________________________ 
 1ebu(A) : STKVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFS 
         :                                                                                                                          
 1ebf(B) : STKVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFS 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________172__________________________________________217________________________ 
 1ebu(A) : SDLATWKALFSNKPTNGFVYHEATVGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEPDPRDDLNGLDVARKVTIVGRISGVEVESPTSF 
         :                                                                                                                          
 1ebf(B) : SDLATWKALFSNKPTNGFVYHEATVGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEPDPRDDLNGLDVARKVTIVGRISGVEVESPTSF 
           ________________________________________________172__________________________________________217________________________ 

           244________________________________________287___________301________________320_______________________________________   
 1ebu(A) : PVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRYTNPVVIQGAGAGAAVTAAGVLGDVIKIAQRL   
         :                                                                                                                          
 1ebf(B) : PVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRYTNPVVIQGAGAGAAVTAAGVLGDVIKIAQRL   
           244________________________________________287___________301________________320_______________________________________   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.9
Translation
(A)
0.1
Closure
(%)
40.6
Bending Residues
( green )
  172 - 173
  217 - 218
  244 - 245
  287 - 288
  301 - 302
  320 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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