Host-Nuclease Inhibitor Protein Gam, Putative

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Host-Nuclease Inhibitor Protein Gam, Putative
  Conformer 1
(PDB) 		2p2u (B)
  Conformer 2
(PDB) 		2p2u (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 44 0.74   11 - 46   151 - 159
2 47 0.66   47 - 98
3 22 0.66   127 - 150
4 26 0.52   99 - 126

Sequence


           ___________________________________46___________________________________________95__________________________126_________ 
 2p2u(B) : VIVADIRQAEGALAEIATIDRKVGEIEAQnEAIDAAKARASQKSAPLLARRKELEDGVATFATLNKTEf-sLDLGFGTIGFRLSTQIVQsKITKDtLERLRQFGISEGIRIKEDVNKEAq 
         :                                                                                                                          
 2p2u(A) : VIVADIRQAEGALAEIATIDRKVGEIEAQnEAIDAAKARASQKSAPLLARRKELEDGVATFATLNKTEfkSLDLGFGTIGFRLSTQIVQsKITKDtLERLRQFGISEGIRIKEDVNKEAq 
           ___________________________________46___________________________________________95__________________________126_________ 

           __________150_______________                                                                                             
 2p2u(B) : GWPDERLEvGLKRRTTDAFYIEINREEV                                                                                             
         :                                                                                                                          
 2p2u(A) : GWPDERLEvGLKRRTTDAFYIEIN****                                                                                             
           __________150_______________                                                                                             

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 33.3 -0.1 0.6   46 - 48 Bending Region Analysis
1 3 24.0 1.8 13.1   150 - 156 Bending Region Analysis
4 2 25.4 2.4 39.2   95 - 100 Bending Region Analysis
4 3 26.1 -1.1 13.0   126 - 128 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 4 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 4

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 4 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 4

Movement classification:

No Contacts

PyMOL Script

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