Huc25 Fab Fragment Heavy Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Huc25 Fab Fragment Heavy Chain
  Conformer 1
(PDB)
2gcy (B)
  Conformer 2
(PDB)
1mhp (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 117 1.38   4 - 121
2 95 0.88   122 - 216

Sequence


           _______________________________________________________________________________________________________________________1 
 2gcy(B) : QVQLQESGGGLVQPGGSLRLSCAASGFTFSDYYMYWVRQAPGKGLEWVATISDGGSYTYYPDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAMYYCSRYRYDDAM-DYWGQGTLVTVSSA 
         :                                                                                                                          
 1mhp(H) : EVQLVESGGGLVQPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVATIS-GGGHTYYLDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCTRGFGDGGYFDVWGQGTLVTVSSA 
           _______________________________________________________________________________________________________________________1 

           21__________________________________________________________________________________________________                     
 2gcy(B) : STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP*                     
         :                                                                                                                          
 1mhp(H) : STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK                     
           21__________________________________________________________________________________________________                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.9
Translation
(A)
-0.5
Closure
(%)
96.9
Bending Residues
( green )
  121 - 122
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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