Hypothetical Protein Ydde

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein Ydde
  Conformer 1
(PDB)
1qya (B)
  Conformer 2
(PDB)
1qy9 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 182 0.51   10 - 12   14 - 14   16 - 21   108 - 283
2 104 0.54   5 - 9   13 - 13   15 - 15   22 - 107   284 - 295

Sequence


           __________________9_12_______21___________________________________________________________________________________107___ 
 1qya(B) : ESTSLYKKAGLKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSDVRIRYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKH 
         :                                                                                                                          
 1qy9(D) : ***********KPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQ-qLIARELGHSETAFLLHSDDSDVRIRYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKH 
           __________________9_12_______21___________________________________________________________________________________107___ 

           ________________________________________________________________________________________________________________________ 
 1qya(B) : NDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANG 
         :                                                                                                                          
 1qy9(D) : NDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKV-iPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGR-fSPAIGIVEDPVTGNANG 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________283______________                                                      
 1qya(B) : PMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL                                                      
         :                                                                                                                          
 1qy9(D) : P-gAWLVHHNVLPHDGNVLRVKGHQGRALGRDG-iEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL                                                      
           __________________________________________________283______________                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.5
Translation
(A)
0.0
Closure
(%)
99.1
Bending Residues
( green )
  9 - 10
  12 - 16
  21 - 22
  107 - 108
  283 - 284
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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