Hypothetical Protein Ph1897

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein Ph1897
  Conformer 1
(PDB)
1vdw (A)
  Conformer 2
(PDB)
1vdw (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 207 1.06   7 - 13   16 - 18   53 - 84   88 - 252
2 34 1.36   14 - 15   19 - 52   85 - 87

Sequence


           __________13___18___________________________52______________________________84_87_______________________________________ 
 1vdw(A) : SVKTWRKIAIDIIRDFDHNIMPLFGNPKASETISIeTKVVDKVAENIIISKFKDLGVNVVSEEIGRIDQGSDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYEPIVERLYE 
         :                                                                                                                          
 1vdw(B) : SVKTWRKIAIDIIRDFDHNIMPLFGNPKASETISdETKVVDKVAENIIISKFKDLGVNVVSEEIGRIDQGSDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYEPIVERLYE 
           __________13___18___________________________52______________________________84_87_______________________________________ 

           ________________________________________________________________________________________________________________________ 
 1vdw(A) : GIPGKGSYLNGEKIKVRELAEKPSISFYTKGKGTKIIDKVKRTRTLGAIALELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVEITFSATEKVNIIAANNEELLE 
         :                                                                                                                          
 1vdw(B) : GIPGKGSYLNGEKIKVRELAEKPSISFYTKGKGTKIIDKVKRTRTLGAIALELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVEITFSATEKVNIIAANNEELLE 
           ________________________________________________________________________________________________________________________ 

           ________                                                                                                                 
 1vdw(A) : TILRSIEK                                                                                                                 
         :                                                                                                                          
 1vdw(B) : TILRSIEK                                                                                                                 
           ________                                                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.5
Translation
(A)
0.2
Closure
(%)
50.0
Bending Residues
( green )
  13 - 16
  18 - 19
  52 - 54
  84 - 85
  87 - 88
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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