Hypothetical Shikimate 5-Dehydrogenase-Like Protein Hi0607

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Shikimate 5-Dehydrogenase-Like Protein Hi0607
  Conformer 1
(PDB)
1npy (C)
  Conformer 2
(PDB)
1npy (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 134 0.26   3 - 104   237 - 268
2 132 0.27   105 - 236

Sequence


           _____________________________________________________________________________________________________104________________ 
 1npy(C) : MINKDTQLCMSLSGRPSNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHPSAQAIESVNTIVNDNGFLRAYNTDYIAIVKLIEKYHLNKNA 
         :                                                                                                                          
 1npy(B) : MINKDTQLCMSLSGRPSNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHPSAQAIESVNTIVNDNGFLRAYNTDYIAIVKLIEKYHLNKNA 
           _____________________________________________________________________________________________________104________________ 

           _________________________________________________________________________________________________________________236____ 
 1npy(C) : KVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETPFIRYAQARGKQTISGAAVIV 
         :                                                                                                                          
 1npy(B) : KVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETPFIRYAQARGKQTISGAAVIV 
           _________________________________________________________________________________________________________________236____ 

           ______________________________                                                                                           
 1npy(C) : LQAVEQFELYTHQRPSDELIAEAAAFARTK                                                                                           
         :                                                                                                                          
 1npy(B) : LQAVEQFELYTHQRPSDELIAEAAAFARTK                                                                                           
           ______________________________                                                                                           

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.0
Translation
(A)
-0.2
Closure
(%)
94.9
Bending Residues
( green )
  104 - 106
  236 - 237
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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