Hypothetical Protein Aq_1966

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein Aq_1966
  Conformer 1
(PDB)
2arh (A)
  Conformer 2
(PDB)
2arh (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 165 0.43   4 - 155   181 - 194
2 25 0.53   156 - 180

Sequence


           ________________________________________________________________________________________________________________________ 
 2arh(A) : DAvKYEELLKTLENGINSEEGEIRLVRKSQGRFKEEFNFDLSLGSKPLLTLKVFLGRKPYWQPWVEVFGVNPNLRNVFFGSEAERKLYEFLSEHFGRIFVEYFEDKETTYELQKGVPPAL 
         :                                                                                                                          
 2arh(B) : **VKYEELLKTLENGINSEEGEIRLVRKSQGRFKEEFNFDLSLGSKPLLTLKVFLGRKPYWQPWVEVFGVNPNLRNVFFGSEAERKLYEFLSEHFGRIFVEYFEDKETTYELQKGVPPAL 
           ________________________________________________________________________________________________________________________ 

           ________________________________155______________________180_________________                                            
 2arh(A) : SRLGFELLKLGYTYFRDWFIPEGLeGGHKIQAEKPKTEEAKKRHLENLKKEFEEFIGKCEDEGLIKKVKERYNFLE*                                            
         :                                                                                                                          
 2arh(B) : SRLGFELLKLGYTYFRDWFIPEGLeGGHKIQAEKPKTEEAKKRHLENLKKEFEEFIGKCEDEGLIKKVKERYNFLEH                                            
           ________________________________155______________________180_________________                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.6
Translation
(A)
-0.1
Closure
(%)
94.2
Bending Residues
( green )
  155 - 156
  180 - 182
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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