Hypothetical Upf0244 Protein Vc0702

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Upf0244 Protein Vc0702
  Conformer 1
(PDB)
1zwy (B)
  Conformer 2
(PDB)
1zwy (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 135 0.52   13 - 119   150 - 180
2 25 0.46   120 - 149

Sequence


           ______________________________________________________________________________________________________________116_______ 
 1zwy(B) : NApPIIKRRVrKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVSVPSEVADQPsDEETKQGALNRVRNAKQRHPGAEYYVGLEAGIEENKTFAWiVESDQQRGESRSACLlPPLVLERL 
         :                                                                                                                          
 1zwy(C) : *********VrKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVSVPSEVADQPsDEETKQGALNRVRNAKQRHPGAEYYVGLEAGIEENKTFAWiVESDQQRGESRSACLlPPLVLERL 
           ______________________________________________________________________________________________________________116_______ 

           __________________148___________________________________                                                                 
 1zwy(B) : -eLGDVdEVFGTENIKQKGGAIGLLTRHHLTRSTVYHQALILALIPFINPEHYPS*                                                                 
         :                                                                                                                          
 1zwy(C) : ReLGDVdEVFGTENIKQKGGAIGLLTRHHLTRSTVYHQALILALIPFINPEHYPSA                                                                 
           __________________148___________________________________                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.4
Translation
(A)
-0.3
Closure
(%)
97.4
Bending Residues
( green )
  116 - 120
  148 - 162
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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