Hypothetical Methylmalonyl-Coa Decarboxylase Alpha Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Methylmalonyl-Coa Decarboxylase Alpha Subunit
  Conformer 1
(PDB)
1x0u (C)
  Conformer 2
(PDB)
1x0u (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 484 1.18   12 - 196   199 - 203   224 - 517
2 22 2.14   197 - 198   204 - 223

Sequence


           ________________________________________________________________________________________________________________________ 
 1x0u(C) : KPPVEKLIEELRQLKEKAYKGGGDERIQFQHSKGKLTARERLALLFDDGKFNEIMTFATTRATEFGLDKQRFYGDGVVTGWGKVDGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALK 
         :                                                                                                                          
 1x0u(A) : KPPVEKLIEELRQLKEKAYKGGGDERIQFQHSKGKLTARERLALLFDDGKFNEIMTFATTRATEFGLDKQRFYGDGVVTGWGKVDGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALK 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________196____203_________________223______________________ 
 1x0u(C) : VGAPVVGINDSGGARIQEGALSLEGYGAVFKMNVMASGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVTGPEITKVVLGEEVSFQDLGGAVVHATKSGVVHFMVDSEQEAIN 
         :                                                                                                                          
 1x0u(A) : VGAPVVGINDSGGARIQEGALSLEGYGAVFKMNVMASGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVTGPEITKVVLGEEVSFQDLGGAVVHATKSGVVHFMVDSEQEAIN 
           ____________________________________________________________________196____203_________________223______________________ 

           ________________________________________________________________________________________________________________________ 
 1x0u(C) : LTKRLLSYLPSNNMEEPPYIDTGDPADRDATGVEQIVPNDAAKPYNMREIIYKIVDNGEFLEVHKHWAQNIIVGFARIAGNVVGIVANNPEEFGGSIDIDAADKAARFIRFCDAFNIPLI 
         :                                                                                                                          
 1x0u(A) : LTKRLLSYLPSNNMEEPPYIDTGDPADRDATGVEQIVPNDAAKPYNMREIIYKIVDNGEFLEVHKHWAQNIIVGFARIAGNVVGIVANNPEEFGGSIDIDAADKAARFIRFCDAFNIPLI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1x0u(C) : SLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPEGAVRILYRKEIQQASNPDDVLKQRIAEYRKLFANPYWAAEKGL 
         :                                                                                                                          
 1x0u(A) : SLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPEGAVRILYRKEIQQASNPDDVLKQRIAEYRKLFANPYWAAEKGL 
           ________________________________________________________________________________________________________________________ 

           ______________________________________                                                                                   
 1x0u(C) : VDDVIEPKDTRRVIVAGLEMLKTKREYRYPKKHGNIPL                                                                                   
         :                                                                                                                          
 1x0u(A) : VDDVIEPKDTRRVIVAGLEMLKTKREYRYPKKHGNIPL                                                                                   
           ______________________________________                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
27.0
Translation
(A)
0.1
Closure
(%)
18.1
Bending Residues
( green )
  196 - 199
  203 - 204
  223 - 225
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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