Hypothetical Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein
  Conformer 1
(PDB)
2nwi (A)
  Conformer 2
(PDB)
2nwi (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 83 0.44   33 - 59   73 - 91   95 - 115   137 - 152
2 73 0.62   3 - 32   60 - 72   92 - 94   116 - 136   153 - 158

Sequence


           ______________________________32_________________________59___________72_________________91_____________________115_____ 
 2nwi(A) : LNAIHRILMTTDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVNYRVVYLRANGEIYAKAISFTPLKRLENSFREDLMRADIPIGKIMRKHNIEARREIRWSRVEEAD 
         :                                                                                                                          
 2nwi(C) : LNAIHRILMTTDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVNYRVVYLRANGEIYAKAISFTPLKRLENSFREDLMRADIPIGKIMRKHNIEARREIRWSRVEEAD 
           ______________________________32_________________________59___________72_________________91_____________________115_____ 

           _____________136_____________152________                                                                                 
 2nwi(A) : LALAKELGIADRRVISRNYNIIHRGKVLINITEFFPMERF                                                                                 
         :                                                                                                                          
 2nwi(C) : LALAKELGIADRRVISRNYNIIHRGKVLINITEFFPMERF                                                                                 
           _____________136_____________152________                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.2
Translation
(A)
0.1
Closure
(%)
32.2
Bending Residues
( green )
  32 - 33
  59 - 62
  72 - 73
  91 - 95
  115 - 116
  136 - 137
  152 - 153
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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