Hypothetical Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein
  Conformer 1
(PDB)
2aua (B)
  Conformer 2
(PDB)
2aua (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 119 0.73   23 - 108   142 - 181
2 60 0.39   5 - 21   109 - 141   182 - 192

Sequence


           _____________________________________21_________________________________________________________________________________ 
 2aua(B) : HHHHSSGVDLGTENLYFQSanETEFYAYHIVTRKKhIGQiPFn--QHNTLYHFFFEREQLNANGEDGIQILNNHYKNDELHINNENAKVVISYdQTIRAARETIVEvRLQEFPEYPSRLS 
         :                                                                                                                          
 2aua(A) : *********LGTENLY----nETEFYAYHIVTRKKhIGQiPFNKNQHNTLYHFFFEREQLNANGEDGIQILNNHYKNDELHINNENAKVVISYdQTIRAARETIVEvRLQEFPEYPSRLS 
           _____________________________________21_________________________________________________________________________________ 

           108______________________________141________________________________178_________________                                 
 2aua(B) : CLYAAKSYEDALKWKALFDSYNREVLQIVKLRVIGSSFEGDGNLLPKEDGIPFSQKIEQARKYWKGN-eLPELLINGEIEVVEIIDDF                                 
         :                                                                                                                          
 2aua(A) : CLYAAKSYEDALKWKALFDSYNREVLQIVKLRVIGSSFEGDGNLLPKEDGIPFSQKIEQARKYWKGNnELPELLINGEIEVVEIIDDF                                 
           108______________________________141________________________________178_________________                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.8
Translation
(A)
0.2
Closure
(%)
99.2
Bending Residues
( green )
  21 - 31
  108 - 109
  141 - 142
  178 - 182
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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