Iclr Transcriptional Regulator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Iclr Transcriptional Regulator
  Conformer 1
(PDB)
1mkm (B)
  Conformer 2
(PDB)
1mkm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 169 0.91   76 - 244
2 73 0.81   3 - 75

Sequence


           ______________________________________________________________________71________________________________________________ 
 1mkm(B) : HMNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLILKDGFEGVYIDKVEGEQSIP 
         :                                                                                                                          
 1mkm(A) : *MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLILKDGFEGVYIDKVEGEQSIP 
           ______________________________________________________________________71________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1mkm(B) : MVSRLGMKVDLYSTASGKSILAFVPEKELKEYLKIVELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVPIFDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEE 
         :                                                                                                                          
 1mkm(A) : MVSRLGMKVDLYSTASGKSILAFVPEKELKEYLKIVELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVPIFDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEE 
           ________________________________________________________________________________________________________________________ 

           _______                                                                                                                  
 1mkm(B) : ISRKLGY                                                                                                                  
         :                                                                                                                          
 1mkm(A) : ISRKLGY                                                                                                                  
           _______                                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
167.8
Translation
(A)
1.4
Closure
(%)
47.0
Bending Residues
( green )
  71 - 77
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download