IgA Fab Fragment (J539)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name IgA Fab Fragment (J539)
  Conformer 1
(PDB)
2fbj (L)
  Conformer 2
(PDB)
2fd6 (L)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 105 0.47   106 - 210
2 102 1.21   3 - 105

Sequence


           ______________________________________________________________________________________________________105_______________ 
 2fbj(L) : EIVLTQSPAITAASLGQKVTITCSASSSVSSLHWYQQKSGTSPKPWIYEISKLASGVPARFSGSGSGTSYSLTINTMEAEDAAIYYCQQWTYPLITFGAGTKLELKRADAAPTVSIFPPS 
         :                                                                                                                          
 2fd6(L) : DIVLTQSPDITAASLGQKVTITCSASSSVSYMHWYQQKSGTSPKPWIFEISKLASGVPARFSGSGSGTSYSLTISSMEAEDAAIYYCQQWNYPF-TFGGGTKLEIKRADAAPTVSIFPPS 
           ______________________________________________________________________________________________________106_______________ 

           _______________________________________________________________________________________________                          
 2fbj(L) : SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC**                          
         :                                                                                                                          
 2fd6(L) : SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEAKA                          
           _______________________________________________________________________________________________                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.1
Translation
(A)
0.2
Closure
(%)
99.8
Bending Residues
( green )
  105 - 106
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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