Igm-Kappa Cold Agglutinin (Heavy Chain)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Igm-Kappa Cold Agglutinin (Heavy Chain)
  Conformer 1
(PDB)
1dn0 (D)
  Conformer 2
(PDB)
1qlr (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 112 0.47   4 - 85   87 - 116
2 91 0.64   86 - 86   117 - 222

Sequence


           ___________________________________________________________________________________85____________________________116____ 
 1dn0(D) : EVQLQQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSS 
         :                                                                                                                          
 1qlr(B) : EVQLQQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSS 
           ___________________________________________________________________________________85____________________________116____ 

           _________________________________________________________________________________________________                        
 1dn0(D) : GSASAPTLFPLVSCsVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPV                        
         :                                                                                                                          
 1qlr(B) : GSASAPTLFPLVSC-vAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLP-------tDEHVVCKVQHPNGNKEKNVPLPV                        
           _________________________________________________________________________________________________                        

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.3
Translation
(A)
-0.8
Closure
(%)
42.1
Bending Residues
( green )
  85 - 89
  116 - 117
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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