Igg1 Antibody 58.2 (Light Chain)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Igg1 Antibody 58.2 (Light Chain)
  Conformer 1
(PDB)
3f58 (L)
  Conformer 2
(PDB)
1ejo (L)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 135 0.63   3 - 107   115 - 117   131 - 145   164 - 170   197 - 197
2 76 0.56   108 - 114   118 - 130   146 - 163   171 - 196   198 - 209

Sequence


           ____________________________________________________________________________________________________________107____114__ 
 3f58(L) : DIVLTQSPASLAVSLGQRATISCKASQGVDFDGASFMNWYQQKPGQPPKLLIFAASTLESGIPARFSGRGSGTDFTLNIHPVEEEDAATYYCQQSHEDPLTFGAGTKLELKRADAAPTVS 
         :                                                                                                                          
 1ejo(L) : DIVLTQSPASLAVSLGQRATISCRASESVDSYGNSFMHWYQQKPGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYYCQQSNEDPLTFGAGTKLELKRADAAPTVS 
           ___________________________________________________________________________________________________________2111___2118__ 

           ___________130____________145_______________163____170_______________________196________________                         
 3f58(L) : IFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR*                         
         :                                                                                                                          
 1ejo(L) : IFPPSSEQLTSGGASVVCFLNNFYPKDINVRWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRA                         
           __________2134___________2149______________2167___2174______________________2200________________                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.3
Translation
(A)
-0.4
Closure
(%)
8.1
Bending Residues
( green )
  107 - 108
  114 - 115
  117 - 118
  130 - 131
  145 - 146
  163 - 164
  170 - 171
  196 - 198
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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