Influenza Recombinant Ha2 Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Influenza Recombinant Ha2 Chain
  Conformer 1
(PDB)
1qu1 (E)
  Conformer 2
(PDB)
1qu1 (D)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 112 1.01   40 - 124   145 - 171
2 20 5.01   125 - 144

Sequence


           ______________________________________________________________________________________121____________________144________ 
 1qu1(E) : GQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEEMGNGSFKIYHKCDNACIESI 
         :                                                                                                                          
 1qu1(D) : GQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEEMGNGSFKIYHKCDNACIESI 
           ______________________________________________________________________________________121____________________144________ 

           __________________________                                                                                               
 1qu1(E) : RNGTYDHDVYRDEALNNRFQIKGVEL                                                                                               
         :                                                                                                                          
 1qu1(D) : RNGTYDHDVYRDEALNNRFQIKGVEL                                                                                               
           __________________________                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
54.0
Translation
(A)
1.9
Closure
(%)
82.9
Bending Residues
( green )
  121 - 125
  144 - 150
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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