Initiation Factor 5A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Initiation Factor 5A
  Conformer 1
(PDB)
1iz6 (C)
  Conformer 2
(PDB)
1iz6 (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 66 1.61   5 - 70
2 63 0.5   71 - 133

Sequence


           ___________________________________________________________________70___________________________________________________ 
 1iz6(C) : GDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEY 
         :                                                                                                                          
 1iz6(B) : GDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEY 
           ___________________________________________________________________70___________________________________________________ 

           ________________                                                                                                         
 1iz6(C) : WETLGRIKIMRIKGE*                                                                                                         
         :                                                                                                                          
 1iz6(B) : WETLGRIKIMRIKGEG                                                                                                         
           ________________                                                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.7
Translation
(A)
0.1
Closure
(%)
74.6
Bending Residues
( green )
  70 - 71
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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