Interleukin-6

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Interleukin-6
  Conformer 1
(PDB)
1p9m (B)
  Conformer 2
(PDB)
1alu  
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 122 0.96   25 - 99   120 - 178
2 20 1.0   100 - 119

Sequence


           _______________________________________________________________________________99_________________119___________________ 
 1p9m(B) : LTSSERIDKQIRYILDGISALRKETCNK---cESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITT 
         :                                                                                                                          
 1alu    : LTSSERIDKQIRYILDGISALRKETCNKSNMCE---------nLNLPKMAEKDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITT 
           _______________________________________________________________________________99_________________119___________________ 

           ______________________________________________                                                                           
 1p9m(B) : PDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM                                                                           
         :                                                                                                                          
 1alu    : PDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM                                                                           
           ______________________________________________                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.0
Translation
(A)
-0.1
Closure
(%)
100.0
Bending Residues
( green )
  99 - 100
  119 - 120
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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