Iron Binding Protein Fbpa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Iron Binding Protein Fbpa
  Conformer 1
(PDB)
1si1 (A)
  Conformer 2
(PDB)
1q35 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 167 0.43   100 - 232   267 - 269   284 - 314
2 143 1.19   4 - 99   233 - 266   270 - 283

Sequence


           _________________________________________________________________________________________________99_____________________ 
 1si1(A) : ANEVNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVLEKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFD 
         :                                                                                                                          
 1q35(A) : ANEVNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFAD-gLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVLEKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFD 
           _________________________________________________________________________________________________99_____________________ 

           ___________________________________________________________________________________________________________230__________ 
 1si1(A) : YLDLAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGNSYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHS 
         :                                                                                                                          
 1q35(A) : YLDLAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGNSYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHS 
           ___________________________________________________________________________________________________________230__________ 

           _______________________266______________283___________________________________                                           
 1si1(A) : PNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEVKFDDF**                                           
         :                                                                                                                          
 1q35(A) : PNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEVKFDDFSE                                           
           _______________________266______________283___________________________________                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
24.0
Translation
(A)
-0.2
Closure
(%)
68.4
Bending Residues
( green )
  99 - 101
  230 - 233
  266 - 270
  283 - 289
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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